Social aggregations of autonomous individuals are a common behavior which can be observed at different scales and levels of complexity. This type of behavior occurs in a wide organisms range, from unicellular (bacteria, myxobacteria, amoeboid) to higher vertebrates (tunas, dolphins, whales). In this type of system, each individual autonomously reacts to stimuli coming from other individuals and/or the environment (usually within a perception range).
These individual-level decisions are spread through the system provoking emergent phenomena. Depending on the species, these association may be called as herds, shoals, flocks, schools or swarms. Furthermore, collective behaviors can be seen in many research areas such as: ecology and biology, sociology, physics, health care, etc.
There are two approaches in order to model population dynamics: equation-oriented or individual-oriented modeling. In equation-oriented modeling the system is represented by a set of state variables and its evolution consists of solving a set of differential equations (eg Lotka-Volterra equations, also known as prey-predator equations). In individual-oriented modeling the system is represented by a set of individuals characterized by their behaviors (interaction rules) and attributes, and an environment in which interaction occurs. Nevertheless, it is very difficult to solve an individual-oriented model analytically whereby it is necessary using simulation tools in order to observe system variables through time.
We have developed methods & techniques in order to use High Performance Computing to execute a distributed individual-oriented simulation using close-to-reality and huge models obtaining excellent speedup
- Improving Communication Patterns for Distributed Cluster-based Individual-oriented Fish School Simulations
- Proximity Load Balancing for Distributed Cluster-based Individual-oriented Fish School Simulations
- High performance distributed cluster-based individual-oriented fish school simulation
- High performance individual-oriented simulation using complex models
- Ph.D. Dissertation (in Spanish)Particionamiento y Balance de Carga en Simulaciones Distribuidas de Bancos de Peces
If you are interested in our Distributed HPC simulator package (this software is based on GNU/Linux & MPI under GNU Affero GPLv3) do not hesitate to contact with us.
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